Andropogoneae Species
Michelle C. Stitzer
Andropogon gerardi
The assembly is allelic, and the genome is hexaploid. It has a haploid genome size of 2300 Mb, and has 30 haploid chromosomes.
Species herbarium records
Herbarium records of Andropogon gerardi from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Andropogon gerardi
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Andropogon gerardi
highlighted with colored points.
Dotplot of Andropogon gerardi vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Andropogon gerardi along the y-axis, vs P. vaginatum on the x-axis. As Andropogon gerardi is a hexaploid with an allelic assembly, we expect 6 paths for any x-axis position.
Fractionation of Andropogon gerardi
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Andropogon gerardi along the y-axis, vs P. vaginatum gene index on the x-axis. As Andropogon gerardi is a hexaploid with an allelic assembly, we expect 6 lines, two for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Andropogon gerardi highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Andropogon gerardi in 1 Mb bins. Gene annotation shown is all Helixer genes.
