Andropogoneae Species
Michelle C. Stitzer
Cymbopogon citratus
The assembly is allelic, and the genome is tetraploid. It has a haploid genome size of 1200 Mb, and has 20 haploid chromosomes.
Species herbarium records
Herbarium records of Cymbopogon citratus from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Cymbopogon citratus
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Cymbopogon citratus
highlighted with colored points.
Dotplot of Cymbopogon citratus vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Cymbopogon citratus along the y-axis, vs P. vaginatum on the x-axis. As Cymbopogon citratus is a tetraploid with an allelic assembly, we expect 4 paths for any x-axis position.
Fractionation of Cymbopogon citratus
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Cymbopogon citratus along the y-axis, vs P. vaginatum gene index on the x-axis. As Cymbopogon citratus is a tetraploid with an allelic assembly, we expect 4 lines, two for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Cymbopogon citratus highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Cymbopogon citratus in 1 Mb bins. Gene annotation shown is all Helixer genes.
