Andropogoneae Species
Michelle C. Stitzer
Cymbopogon refractus
The assembly is haploid, and the genome is diploid. It has a haploid genome size of 800 Mb, and has 10 haploid chromosomes.
Species herbarium records
Herbarium records of Cymbopogon refractus from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Cymbopogon refractus
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Cymbopogon refractus
highlighted with colored points.
Dotplot of Cymbopogon refractus vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Cymbopogon refractus along the y-axis, vs P. vaginatum on the x-axis. As Cymbopogon refractus is a diploid with a haploid assembly, we expect 1 paths for any x-axis position.
Fractionation of Cymbopogon refractus
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Cymbopogon refractus along the y-axis, vs P. vaginatum gene index on the x-axis. As Cymbopogon refractus is a diploid with a haploid assembly, we expect 1 lines, one for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Cymbopogon refractus highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Cymbopogon refractus in 1 Mb bins. Gene annotation shown is all Helixer genes.
