Andropogoneae Species
Michelle C. Stitzer
Hemarthria compressa
The assembly is allelic, and the genome is hexaploid. It has a haploid genome size of 3000 Mb, and has 27 haploid chromosomes.
Species herbarium records
Herbarium records of Hemarthria compressa from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Hemarthria compressa
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Hemarthria compressa
highlighted with colored points.
Dotplot of Hemarthria compressa vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Hemarthria compressa along the y-axis, vs P. vaginatum on the x-axis. As Hemarthria compressa is a hexaploid with an allelic assembly, we expect 6 paths for any x-axis position.
Fractionation of Hemarthria compressa
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Hemarthria compressa along the y-axis, vs P. vaginatum gene index on the x-axis. As Hemarthria compressa is a hexaploid with an allelic assembly, we expect 6 lines, two for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Hemarthria compressa highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Hemarthria compressa in 1 Mb bins. Gene annotation shown is all Helixer genes.
