Ischaemum rugosum

Photo by International Rice Research Institute (IRRI), licensed under CC BY 2.0

The assembly is haploid, and the genome is diploid. It has a haploid genome size of 700 Mb, and has 10 haploid chromosomes.

Species herbarium records

Herbarium records of Ischaemum rugosum from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.

Highlighted Figure 1

Figure 1 from the main text, with Ischaemum rugosum highlighted with colored points.

Highlighted Figure 2

Figure 2 from the main text, with Ischaemum rugosum highlighted with colored points.

Dotplot of Ischaemum rugosum vs. Paspalum vaginatum

Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Ischaemum rugosum along the y-axis, vs P. vaginatum on the x-axis. As Ischaemum rugosum is a diploid with a haploid assembly, we expect 1 paths for any x-axis position.

Fractionation of Ischaemum rugosum

Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Ischaemum rugosum along the y-axis, vs P. vaginatum gene index on the x-axis. As Ischaemum rugosum is a diploid with a haploid assembly, we expect 1 lines, one for each subgenome.

Highlighted Figure 5

Figure 5 from the main text, with Ischaemum rugosum highlighted with colored points or lines.

Spatial distribution of genes and TEs

Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Ischaemum rugosum in 1 Mb bins. Gene annotation shown is all Helixer genes.