Andropogoneae Species
Michelle C. Stitzer
Sorghum bicolor
The assembly is haploid, and the genome is diploid. It has a haploid genome size of 700 Mb, and has 10 haploid chromosomes.
Species herbarium records
Herbarium records of Sorghum bicolor from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Sorghum bicolor
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Sorghum bicolor
highlighted with colored points.
Dotplot of Sorghum bicolor vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Sorghum bicolor along the y-axis, vs P. vaginatum on the x-axis. As Sorghum bicolor is a diploid with a haploid assembly, we expect 1 paths for any x-axis position.
Fractionation of Sorghum bicolor
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Sorghum bicolor along the y-axis, vs P. vaginatum gene index on the x-axis. As Sorghum bicolor is a diploid with a haploid assembly, we expect 1 lines, one for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Sorghum bicolor highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Sorghum bicolor in 1 Mb bins. Gene annotation shown is all Helixer genes.