Andropogoneae Species
Michelle C. Stitzer
Schizachyrium scoparium
The assembly is allelic, and the genome is tetraploid. It has a haploid genome size of 1700 Mb, and has 20 haploid chromosomes.
Species herbarium records
Herbarium records of Schizachyrium scoparium from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Schizachyrium scoparium
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Schizachyrium scoparium
highlighted with colored points.
Dotplot of Schizachyrium scoparium vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Schizachyrium scoparium along the y-axis, vs P. vaginatum on the x-axis. As Schizachyrium scoparium is a tetraploid with an allelic assembly, we expect 4 paths for any x-axis position.
Fractionation of Schizachyrium scoparium
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Schizachyrium scoparium along the y-axis, vs P. vaginatum gene index on the x-axis. As Schizachyrium scoparium is a tetraploid with an allelic assembly, we expect 4 lines, two for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Schizachyrium scoparium highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Schizachyrium scoparium in 1 Mb bins. Gene annotation shown is all Helixer genes.
