Andropogoneae Species
Michelle C. Stitzer
Tripsacum dactyloides KS
The assembly is haploid, and the genome is paleotetraploid. It has a haploid genome size of 2600 Mb, and has 18 haploid chromosomes.
Species herbarium records
Herbarium records of Tripsacum dactyloides KS from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Tripsacum dactyloides KS
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Tripsacum dactyloides KS
highlighted with colored points.
Dotplot of Tripsacum dactyloides KS vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Tripsacum dactyloides KS along the y-axis, vs P. vaginatum on the x-axis. As Tripsacum dactyloides KS is a paleotetraploid with a haploid assembly, we expect 2 paths for any x-axis position.
Fractionation of Tripsacum dactyloides KS
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Tripsacum dactyloides KS along the y-axis, vs P. vaginatum gene index on the x-axis. As Tripsacum dactyloides KS is a paleotetraploid with a haploid assembly, we expect 2 lines, one for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Tripsacum dactyloides KS highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Tripsacum dactyloides KS in 1 Mb bins. Gene annotation shown is all Helixer genes.
