Andropogoneae Species
Michelle C. Stitzer
Tripsacum dactyloides FL
The assembly is haploid, and the genome is paleotetraploid. It has a haploid genome size of 2700 Mb, and has 18 haploid chromosomes.
Species herbarium records
Herbarium records of Tripsacum dactyloides FL from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Tripsacum dactyloides FL
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Tripsacum dactyloides FL
highlighted with colored points.
Dotplot of Tripsacum dactyloides FL vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Tripsacum dactyloides FL along the y-axis, vs P. vaginatum on the x-axis. As Tripsacum dactyloides FL is a paleotetraploid with a haploid assembly, we expect 2 paths for any x-axis position.
Fractionation of Tripsacum dactyloides FL
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Tripsacum dactyloides FL along the y-axis, vs P. vaginatum gene index on the x-axis. As Tripsacum dactyloides FL is a paleotetraploid with a haploid assembly, we expect 2 lines, one for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Tripsacum dactyloides FL highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Tripsacum dactyloides FL in 1 Mb bins. Gene annotation shown is all Helixer genes.
