Andropogoneae Species
Michelle C. Stitzer
Urelytrum digitatum
The assembly is haploid, and the genome is hexaploid. It has a haploid genome size of 4700 Mb, and has 30 haploid chromosomes.
Species herbarium records
Herbarium records of Urelytrum digitatum from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Urelytrum digitatum
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Urelytrum digitatum
highlighted with colored points.
Dotplot of Urelytrum digitatum vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Urelytrum digitatum along the y-axis, vs P. vaginatum on the x-axis. As Urelytrum digitatum is a hexaploid with a haploid assembly, we expect 3 paths for any x-axis position.
Fractionation of Urelytrum digitatum
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Urelytrum digitatum along the y-axis, vs P. vaginatum gene index on the x-axis. As Urelytrum digitatum is a hexaploid with a haploid assembly, we expect 3 lines, one for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Urelytrum digitatum highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Urelytrum digitatum in 1 Mb bins. Gene annotation shown is all Helixer genes.
