Andropogoneae Species
Michelle C. Stitzer
Zea diploperennis Momo
The assembly is haploid, and the genome is paleotetraploid. It has a haploid genome size of 2500 Mb, and has 10 haploid chromosomes.
Species herbarium records
Herbarium records of Zea diploperennis Momo from AuBuchon-Elder et al 2022 are plotted with black points, The sampled individual this genome was generated from is shown in a colored point. The green background shows the biogeographic ranges of all Andropogoneae species in AuBuchon-Elder et al 2022.
Highlighted Figure 1
Figure 1 from the main text, with Zea diploperennis Momo
highlighted with colored points.
Highlighted Figure 2
Figure 2 from the main text, with Zea diploperennis Momo
highlighted with colored points.
Dotplot of Zea diploperennis Momo vs. Paspalum vaginatum
Like dotplots shown in Figure 3 of the main text, this shows syntenic blocks in Zea diploperennis Momo along the y-axis, vs P. vaginatum on the x-axis. As Zea diploperennis Momo is a paleotetraploid with a haploid assembly, we expect 2 paths for any x-axis position.
Fractionation of Zea diploperennis Momo
Like plots shown in Figure 4 of the main text, this shows proportion of retained genes in Zea diploperennis Momo along the y-axis, vs P. vaginatum gene index on the x-axis. As Zea diploperennis Momo is a paleotetraploid with a haploid assembly, we expect 2 lines, one for each subgenome.
Highlighted Figure 5
Figure 5 from the main text, with Zea diploperennis Momo highlighted with colored points or lines.
Spatial distribution of genes and TEs
Density of genes and repeats along the longest sequence (contig, scaffold, or chromosome) of Zea diploperennis Momo in 1 Mb bins. Gene annotation shown is all Helixer genes.
